refactor(skill): transition from artifact set to bundle structure

- Replaced SkillArtifactSet with SkillBundle across various components, enhancing the organization of skill dependencies and references.
- Updated SkillManager methods to load and save bundles instead of artifacts, improving clarity in asset management.
- Refactored SkillCompiler to compile skills into bundles, streamlining the dependency resolution process.
- Adjusted DifyCli and SandboxBashSession to utilize ToolDependencies, ensuring consistent handling of tool references.
- Introduced AssetReferences for better management of file dependencies within skill bundles.

api/core/sandbox/bash/dify_cli.py

@@ -8,7 +8,7 @@ from pydantic import BaseModel, Field
 from core.app.entities.app_invoke_entities import InvokeFrom
 from core.model_runtime.utils.encoders import jsonable_encoder
 from core.session.cli_api import CliApiSession
-from core.skill.entities import ToolArtifact, ToolReference
+from core.skill.entities import ToolDependencies, ToolReference
 from core.tools.entities.tool_entities import ToolParameter, ToolProviderType
 from core.tools.tool_manager import ToolManager
 from core.virtual_environment.__base.entities import Arch, OperatingSystem
@@ -131,14 +131,14 @@ class DifyCliConfig(BaseModel):
         cls,
         session: CliApiSession,
         tenant_id: str,
-        artifact: ToolArtifact,
+        tool_deps: ToolDependencies,
     ) -> DifyCliConfig:
         from configs import dify_config
 
         cli_api_url = dify_config.CLI_API_URL
 
         tools: list[Tool] = []
-        for dependency in artifact.dependencies:
+        for dependency in tool_deps.dependencies:
             tool = ToolManager.get_tool_runtime(
                 tenant_id=tenant_id,
                 provider_type=dependency.type,
@@ -155,7 +155,7 @@ class DifyCliConfig(BaseModel):
                 cli_api_session_id=session.id,
                 cli_api_secret=session.secret,
             ),
-            tool_references=[DifyCliToolReference.create_from_tool_reference(ref) for ref in artifact.references],
+            tool_references=[DifyCliToolReference.create_from_tool_reference(ref) for ref in tool_deps.references],
             tools=[DifyCliToolConfig.create_from_tool(tool) for tool in tools],
         )